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If you alter the catalina.sh script as described about above the inspectIT agent will be started with any action (start/stop/etc) you call the script with. It can be very annoying and usually not necessary to use inspectIT agent when Tomcat is stopped for example. To only use inspectIT agent with starting the Tomcat you can use following "hack":

if [ "$1" = "start" ]; then
	JAVA_OPTS="$JAVA_OPTS -javaagent:[INSPECTIT_AGENT_HOME]/inspectit-agent.jar -Dinspectit.repository=[REPOSIOTRY_IP]:[REPOSITORY_PORT] -Dinspectit.agent.name=[AGENT_DISPLAY_NAME]"
fi

This has been tested with Tomcat version 7.0.70